From the bioRxiv: A Selection of Recently Posted Papers from SCGB Investigators and Others
Modeling functional cell types in spike train data
Daniel N Zdeblick, Eric T Shea-Brown, Daniela M Witten, and Michael A Buice
bioRxiv posted 1 March 2023
Brain-wide neural activity underlying memory-guided movement
Susu Chen, Yi Liu, Ziyue Wang, Jennifer Colonell, Liu D Liu, Han Hou, Nai-Wen Tien, Tim Wang, Timothy Harris, Shaul Druckmann, Nuo Li, and Karel Svoboda
bioRxiv posted 2 March 2023
Disentangling Mixed Classes of Covariability in Large-Scale Neural Data
Arthur Pellegrino, Heike Stein, and N Alex Cayco-Gajic
bioRxiv posted 2 March 2023
Probing inter-areal computations with a cellular resolution two-photon holographic mesoscope
Lamiae Abdeladim, Hyeyoung Shin, Uday Jagadisan, Mora Ogando, and Hillel Adesnik
bioRxiv posted 3 March 2023
The geometry of appetitive-aversive value representations in medial prefrontal networks
Nanci Winke, Cyril Herry, and Daniel Jercog
bioRxiv posted 3 March 2023
Homeostatic synaptic scaling optimizes learning in network models of neural population codes
Jonathan Mayzel and Elad Schneidman
bioRxiv posted 5 March 2023
Delayed formation of neural representations of space in aged mice
Kelsey D. McDermott, M. Agustina Frechou, Jake T. Jordan, Sunaina S Martin, and J. Tiago Goncalves
bioRxiv posted 9 March 2023
The neurocellular implementation of representational geometry in primate prefrontal cortex
Xiao-Xiong Lin, Andreas Nieder, and Simon N Jacob
bioRxiv posted 6 March 2023
A hippocampus-accumbens code guides goal-directed appetitive behavior
Oliver Barnstedt, Petra Mocellin, and Stefan Remy
bioRxiv posted 9 March 2023
Inferring functional organization of posterior parietal cortex circuitry based on information flow
Jung Uk Kang, Eric Mooshagian, and Lawrence H. Snyder
bioRxiv posted 9 March 2023
Sex differences in neural representations of social and nonsocial reward in the medial prefrontal cortex
Jennifer Isaac, Sonia Karkare, Hymavathy Balasubramanian, Nicholas Schappaugh, Jarildy Javier, Maha Rashid, and Malavika Murugan
bioRxiv posted 14 March 2023
An adaptive behavioral control motif mediated by cortical axo-axonic inhibition
Kanghoon Jung, Minhyeok Chang, Andre Steinecke, Benjamin Burke, Youngjin Choi, Oisi Yasuhiro, David Fitzpatrick, Hiroki Taniguchi, and Hyung-Bae Kwon
bioRxiv posted 11 March 2023
Neural manifolds and gradient-based adaptation in neural-interface tasks
Alexandre Payeur, Amy L Orsborn, and Guillaume Lajoie
bioRxiv posted 12 March 2023
Dimensionality reduction reveals separate translation and rotation populations in the zebrafish hindbrain
Claudia E Feierstein, Michelle H M de Goeij, Aaron D Ostrovsky, Alexandre Laborde, Ruben Portugues, Michael B Orger, and Christian K Machen
bioRxiv posted 12 March 2023
Organization and Plasticity of Inhibition in Hippocampal Recurrent Circuits
Bert Vancura, Tristan Geiller, and Attila Losonczy
bioRxiv posted 13 March 2023
Connectome-constrained deep mechanistic networks predict neural responses across the fly visual system at single-neuron resolution
Janne K Lappalainen, Fabian D Tschopp, Sridhama Prakhya, Mason McGill, Aljoscha Nern, Kazunori Shinomiya, Shin-ya Takemura, Eyal Gruntman, Jakob H Macke, and Srinivas C Turaga
bioRxiv posted 13 March 2023
Pattern completion and disruption characterize contextual modulation in mouse visual cortex
Jiakun Fu, Suhas Shrinivasan, Kayla Ponder, Taliah Muhammad, Zhuokun Ding, Eric Wang, Zhiwei Ding, Dat T. Tran, Paul G. Fahey, Stelios Papadopoulos, Saumil Patel, Jacob Reimer, Alexander S. Ecker, Xaq Pitkow, Ralf M. Haefner, Fabian H. Sinz, Katrin Franke, and Andreas S. Tolias
bioRxiv posted 14 March 2023
Modeling and dissociation of intrinsic and input-driven neural population dynamics underlying behavior
Parsa Vahidi, Omid G Sani, and Maryam M Shanechi
bioRxiv posted 14 March 2023
Aversive experience drives offline ensemble reactivation to link memories across days
Yosif Zaki, Zachary T Pennington, Denisse Morales-Rodriguez, Taylor R Francisco, Alexa R LaBanca, Zhe Dong, Simon Carrillo Segura, Alcino J. Silva, Tristan Shuman, Andre Fenton, Kanaka Rajan, and Denise Jade Cai
bioRxiv posted 14 March 2023
Dynamical flexible inference of nonlinear latent structures in neural population activity
Hamidreza Abbaspourazad, Eray Erturk, Bijan Pesaran, and Maryam M Shanechi
bioRxiv posted 14 March 2023
Bipartite invariance in mouse primary visual cortex
Zhiwei Ding, Dat T. Tran, Kayla Ponder, Erick Cobos, Zhuokun Ding, Paul G. Fahey, Eric Wang, Taliah Muhammad, Jiakun Fu, Santiago A. Cadena, Stelios Papadopoulos, Saumil Patel, Katrin Franke, Jacob Reimer, Fabian H. Sinz, Alexander S. Ecker, Xaq Pitkow, and Andreas S. Tolias
bioRxiv posted 16 March 2023
Drift of neural ensembles driven by slow fluctuations of intrinsic excitability
Geoffroy Delamare, Yosif Zaki, Denise J Cai, and Claudia Clopath
bioRxiv posted 17 March 2023
Multifaceted luminance gain control beyond photoreceptors in Drosophila
Madhura D Ketkar, Shuai Shao, Julijana Gjorgjieva, and Marion Silies
bioRxiv posted 18 March 2023
Perirhinal Cortex Learns A Predictive Map of The Task Environment
David G Lee, Caroline A McLachlan, Ramon Nogueira, Osung Kwon, Alanna Carey, Garrett House, Gavin D Lagani, Danielle LaMay, Stefano Fusi, and Jerry L Chen
bioRxiv posted 18 March 2023
Generalizing biological surround suppression based on center surround similarity via deep neural network models
Xu Pan, Annie DeForge, and Odelia Schwartz
bioRxiv posted 19 March 2023
Paying attention to natural scenes in area V1
Andreea Lazar, Liane Klein, Johanna Klon-Lipok, Mihaly Banyai, Gergo Orban, and Wolf Singer
bioRxiv posted 21 March 2023
Towards a Foundation Model of the Mouse Visual Cortex
Eric Y Wang, Paul G. Fahey, Kayla Ponder, Zhuokun Ding, Andersen Change, Taliah Muhammad, Saumil Patel, Zhiwei Ding, Dat T. Tran, Jiakun Fu, Stelios Papadopoulos, Katrin Franke, Alexander S. Ecker, Jacob Reimer, Xaq Pitkow, Fabian H. Sinz, and Andreas S. Tolias
bioRxiv posted 24 March 2023
Dynamic control of sequential retrieval speed in networks with heterogeneous learning rules
Maxwell Gillett and Nicolas Brunel
bioRxiv posted 24 March 2023
A neuronal least-action principle for real-time learning in cortical circuits
Walter Senn, Dominik Dold, Akos Kungl, Benjamin Ellenberger, Jakob Jordan, Yoshua Bengio, Joao Sacramento, and Mihai A Petrovici
bioRxiv posted 25 March 2023
Neural timescales reflect behavioral demands in freely moving rhesus macaques
Ana M.G. Manea, Anna Zilverstand, Ben Hayden, and Jan Zimmermann
bioRxiv posted 28 March 2023
Learning to learn: Single session acquisition of new rules by freely-moving mice
Amir Levi, Noam Aviv, and Eran Stark
bioRxiv posted 28 March 2023
Distinct mesoscale cortical dynamics encode search strategies during spatial navigation
Daniel Surinach, Mathew L Rynes, Kapil Saxena, Eunsong Ko, A. David Redish, A. David Redish, and Suhasa Bangalore Kodandaramaiah
bioRxiv posted 28 March 2023
The structure and function of neural connectomes are shaped by a small number of design principles
Adam Haber, Adrian A. Wanner, Rainer W. Friedrich, Elad Schneidman
bioRxiv posted 15 March 2023
Neuromuscular Basis of Drosophila Larval Escape Behavior
Patricia C Cooney, Wenze Li, Yuhan Huang, Richard Hormigo, Tanya Tabachnik, Elizabeth M C Hillman, Wesley B Grueber, Aref A Zarin
bioRxiv posted 20 March 2023
Keypoint-MoSeq: parsing behavior by linking point tracking to pose dynamics
Caleb Weinreb, Mohammed Abdal Monium Osman, Libby Zhang, Sherry Lin, Jonah Pearl, Sidharth Annapragada, Eli Conlin, Winthrop F Gillis, Maya Jay, Shaokai Ye, Alexander Mathis, Mackenzie Weygandt Mathis, Talmo Pereira, Scott W Linderman, Sandeep Robert Datta
bioRxiv posted 5 April 2023
NEURD: automated proofreading and feature extraction for connectomics
Brendan Celii, Stelios Papadopoulos, Zhuokun Ding, Paul G Fahey, Eric Wang, Christos Papadopoulos, Alexander B Kunin, Saumil Patel, J Alexander Bae, Agnes L Bodor, Derrick Brittain, JoAnn Buchanan, Daniel J Bumbarger, Manuel A Castro, Erick Cobos, Sven Dorkenwald, Leila Elabbady, Akhilesh Halageri, Zhen Jia, Chris Jordan, Dan Kapner, Nico Kemnitz, Sam Kinn, Kisuk Lee, Kai Li, Ran Lu, Thomas Macrina, Gayathri Mahalingam, Eric Mitchell, Shanka Subhra Mondal, Shang Mu, Barak Nehoran, Sergiy Popovych, Casey M Schneider-Mizell, William Silversmith, Marc Takeno, Russel Torres, Nicholas L Turner, William Wong, Jingpeng Wu, Szi-Chieh Yu, Wenjing Yin, Daniel Xenes, Lindsey M Kitchell, Patricia K Rivlin, Victoria A Rose, Caitlyn A Bishop, Brock Wester, Emmanouil Froudarakis, Edgar Y Walker, Fabian Sinz, H Sebastian Seung, Forrest Collman, Nuno Maçarico da Costa, R Clay Reid, Xaq Pitkow, Andreas S Tolias, Jacob Reimer
bioRxiv posted 29 March 2023
Functional connectomics reveals general wiring rule in mouse visual cortex
Ding Z, Fahey PG, Papadopoulos S, Wang E, Celii B, Papadopoulos C, Kunin AB, Chang A, Fu J, Ding Z, Patel S, Ponder K, Bae JA, Bodor AL, Brittain D, Buchanan J, Bumbarger DJ, Castro MA, Cobos E, Dorkenwald S, Elabbady L, Halageri A, Jia Z, Jordan C, Kapner D, Kemnitz N, Kinn S, Lee K, Li K, Lu R, Macrina T, Mahalingam G, Mitchell E, Mondal SS, Mu S, Nehoran B, Popovych S, Schneider-Mizell CM, Silversmith W, Takeno M, Torres R, Turner NL, Wong W, Wu J, Yin W, Yu SC, Froudarakis E, Sinz F, Seung HS, Collman F, da Costa NM, Reid RC, Walker EY, Pitkow X, Reimer J, Tolias AS.
bioRxiv posted 30 March 2023
Dual credit assignment processes underlie dopamine signals in a complex spatial environment
Timothy A Krausz, Alison E Comrie, Loren M Frank, Nathaniel D Daw, Joshua D Berke
bioRxiv posted 19 March 2023
