From the bioRxiv: A Selection of Recently Posted Papers from SCGB Investigators and Others
Ketamine evoked disruption of entorhinal and hippocampal spatial maps
Francis Kei Masuda, Yanjun Sun, Emily A Aery Jones, and Lisa M Giocomo
bioRxiv posted 6 February 2023
Long-term unsupervised recalibration of cursor BCIs
Guy H Wilson, Francis R Willett, Elias A Stein, Foram Kamdar, Donald T Avansino, Leigh R Hochberg, Krishna V Shenoy, Shaul Druckmann, and Jaimie M. Henderson
bioRxiv posted 4 February 2023
Inferring context-dependent computations through linear approximations of prefrontal cortex dynamics
Joana Soldado Magraner, Valerio Mante, and Maneesh Sahani
bioRxiv posted 6 February 2023
Massive Multiplexing of Spatially Resolved Single Neuron Projections with Axonal BARseq
Li Yuan, Xiaoyin Chen, Huiqing Zhan, Henry L Gilbert, Anthony M Zador
bioRxiv posted 18 February 2023
Delayed normalization model captures disparate nonlinear neural dynamics measured with different techniques in macaque and human V1
Jingyang Zhou, Matt Whitmire, Yuzhi Chen, and Eyal Seidemann
bioRxiv posted 1 February 2023
Spatial uncertainty and environmental geometry in navigation
Yul HR Kang, Daniel M Wolpert, and Máté Lengyel
bioRxiv posted 1 February 2023
Localist versus distributed representation of sounds in the auditory cortex controlled by distinct inhibitory neuronal subtypes
Melanie Tobin, Janaki Neimark Sheth, Katherine C Wood, and Maria Neimark Geffen
bioRxiv posted 2 February 2023
Stable sound decoding despite modulated sound representation in the auditory cortex
Akihiro Funamizu, Fred Marbach, and Anthony M Zador
bioRxiv posted 7 February 2023
The formation of an expanding memory representation in the hippocampus
Sachin P Vaidya, Raymond A Chitwood, and Jeffrey C Magee
bioRxiv posted 2 February 2023
Auditory memory of complex sounds in sparsely distributed, highly correlated neurons in the auditory cortex
HiJee Kang and Patrick O Kanold
bioRxiv posted 3 February 2023
Large-scale brain-wide neural recording in nonhuman primates
Eric M. Trautmann, Janis K. Hesse, Gabriel M. Stine, Ruobing Xia, Shude Shude Zhu, Daniel J. O’Shea, Bill Karsh, Jennifer Colonell, Frank Lanfranchi, Saurabh Vyas, Andrew Zimnik, Natalie A. Steinemann, Daniel A. Wagenaar, Alexandru Andrei, Carolina Mora Lopez, John M. OCallaghan, Jan Putzeys, Bogdan C. Raducanu, Marleen Welkenhuysen, Mark Churchland, Tirin Moore, Michael N. Shadlen, Krishna V. Shenoy, Doris Tsao, Baruneb Dutta, and Tim Harris
bioRxiv posted 10 January 2023
Behavioral measurements of motor readiness in mice
Elise N Mangin, Jian Chen, Jing Lin, Nuo Li
bioRxiv posted 4 February 2023
Statistically inferred neuronal connections in subsampled neural networks strongly correlate with spike train covariance
Tong Liang and Braden A. W. Brinkman
bioRxiv posted 3 February 2023
Simulation-based inference for efficient identification of generative models in connectomics
Jan Boelts, Philipp Harth, Richard Gao, Daniel Udvary, Felipe Yanez, Daniel Baum, Hans-Christian Hege, Marcel Oberlaender, and Jakob H Macke
bioRxiv posted 3 February 2023
A Theory of Hippocampal Theta Correlations
Yuk-Hoi Yiu and Christian Leibold
bioRxiv posted 5 February 2023
Simultaneous Electrophysiology and Optogenetic Perturbation of the Same Neurons in Chronically Implanted Animals using microLED Silicon Probes
Nathaniel Reid Kinsky, Mihaly Voroslakos, Jose R Lopez Ruiz, Laurel Watkins de Jong, Nathan Slager, Sam McKenzie, Euisik Yoon, and Kamran Diba
bioRxiv posted 6 February 2023
Sharp wave ripple coupling in zebrafish hippocampus and basolateral amygdala
Ismary Blanco, Adam Caccavano, Jian Young Wu, Stefano Vicini, Eric Glasgow, and Katherine Conant
bioRxiv posted 8 February 2023
Subdural CMOS optical probe (SCOPe) for bidirectional neural interfacing
Eric H Pollmann, Heyu Yin, Ilke Uguz, Agrita Dubey, Katie Elizabeth Wingel, John S Choi, Sajjad Moazeni, Yatin Gilhotra, Victoria A Pavlovsky, Adam Banees, Vivek Boominathan, Jacob Robinson, Ashok Veeraraghavan, Vincent A Pieribone, Bijan Pesaran, Kenneth L Shepard
bioRxiv posted on 8 February 2023
Out of sight, out of mind: Responses in primate ventral visual cortex track individual fixations during natural vision
Will Xiao, Saloni Sharma, Gabriel Kreiman, and Margaret Livignstone
bioRxiv posted 9 February 2023
Multiplexed Subspaces Route Neural Activity Across Brain-wide Networks
Camden J MacDowell, Alexandra Libby, Caroline I Jahn, Sina Tafazoli, and Timothy J Buschman
bioRxiv posted 12 February 2023
Topological Structure of Population Activity in Mouse Visual Cortex Encodes Visual Scene Rotations
Kosio Beshkov and Gaute Tomas Einevoll
bioRxiv posted 14 February 2023
Restructuring of olfactory representations in the fly brain around odor relationships in natural sources
Jie-Yoon Yang, Thomas F O’Connell, Wei-Mien M Hsu, Matthew S Bauer, Kristina V. Dylla, Tatyana O Sharpee, and Elizabeth J Hong
bioRxiv posted 16 February 2023
Stimulus novelty uncovers coding diversity in visual cortical circuits
Marina Garrett, Peter Groblewski, Alex Piet, Doug Ollerenshaw, Farzaneh Najafi, Iryna Yavorska, Adam Amster, Corbett Bennett, Michael Buice, Shiella Caldejon, Linzy Casal, Florence D’Orazi, Scott Daniel, Saskia EJ de Vries, Daniel Kapner, Justin Kiggins, Jerome Lecoq, Peter Ledochowitsch, Sahar Manavi, Nicholas Mei, Christopher B. Morrison, Sarah Naylor, Natalia Orlova, Jed Perkins, Nick Ponvert, Clark Roll, Sam Seid, Derric Williams, Allison Williford, Ruweida Ahmed, Daniel Amine, Yazan Billeh, Chris Bowman, Nicholas Cain, Andrew Cho, Tim Dawe, Max Departee, Marie Desoto, David Feng, Sam Gale, Emily Gelfand, Nile Gradis, Conor Grasso, Nicole Hancock, Brian Hu, Ross Hytnen, Xiaoxuan Jia, Tye Johnson, India Kato, Sara Kivikas, Leonard Kuan, Quinn L’Heureux, Sophie Lambert, Arielle Leon, Elizabeth Liang, Fuhui Long, Kyla Mace, Ildefons Magrans de Abril, Chris Mochizuki, Chelsea Nayan, Katherine North, Lydia Ng, Gabriel Koch Ocker, Michael Oliver, Paul Rhoads, Kara Ronellenfitch, Kathryn Schelonka, Josh Sevigny, David Sullivan, Ben Sutton, Jackie Swapp, Thuyanh K Nguyen, Xana Waughman, Joshua Wilkes, Michael Wang, Colin Farrell, Wayne Wakeman, Hongkui Zeng, John Phillips, Stefan Mihalas, Anton Arkhipov, Christof Koch, and Shawn R Olsen
bioRxiv posted 17 February 2023
Dual credit assignment processes underlie dopamine signals in a complex spatial environment
Timothy Amos Krausz, Alison E. Comrie, Loren M. Frank, Nathaniel Douglass Daw, and Joshua D. Berke
bioRxiv posted 16 February 2023
ArMo: An Articulated Mesh Approach for Mouse 3D Reconstruction
James P. Bohnslav, Mohammed Abdal Monium Osman, Akshay Jaggi, Sofia Soares, Caleb Weinreb, Sandeep Robert Datta and Christopher D. Harvey
bioRxiv. posted 18 February 2023
Learning rules for cortical-like spontaneous replay of an internal model
Toshitake Asabuki and Tomoki Fukai
bioRxiv posted 18 February 2023
Rate versus synchrony codes for cerebellar control of motor behavior
David J Herzfeld, Mati Joshua, and Stephen G Lisberger
bioRxiv posted 18 February 2023
Distinguishing examples while building concepts in hippocampal and artificial networks
Louis Kang and Taro Toyoizumi
bioRxiv posted 21 February 2023
Neural dynamics in the rodent motor cortex enables flexible control of vocal timing
Hippocampal remapping induced by new behavior is mediated by spatial context
Samuel J Levy and Michael E Hasselmo
bioRxiv posted 21 February 2023
Learning-induced reorganization of neuronal subnetworks in the primary sensory cortex
Yexin Yang, Hao Shen, and Sung Eun Kwon
bioRxiv posted 21 February 2023
Emergence of universal computations through neural manifold dynamics
Joan Gort Vicente
bioRxiv posted 22 February 2023
Single neurons in the human medial temporal lobe flexibly shift representations across spatial and memory tasks
Thomas Donoghue, Runnan Cao, Claire Zhixian Han, Cameron Monteith Holman, Nicholas J Brandmeir, Shuo Wang, and Joshua Jacobs
bioRxiv posted 23 February 2023
Repeated passive visual experience modulates spontaneous and novelty-evoked neural activity.
Suraj Niraula, William Hauser, Adam G Rouse, and Jaichandar Subramanian
bioRxiv posted 22 February 2023
Single-neuron spiking variability in hippocampus dynamically tracks sensory content during memory formation in humans
Leonhard Waschke, Fabian Kamp, Evi van den Elzen, Suresh Krishna, Ulman Lindenberger, Ueli Rutishauser, and Douglas D. Garrett
bioRxiv posted 23 February 2023
Striatal ensemble activity in an innate naturalistic behavior
Samuel Minkowicz, Mychaela Alexandria Mathews, Felicia Hoilam Mou, Hyoseo Yoon, Sara Nicole Freda, Ethan S Cui, Ann Kennedy, and Yevgenia Kozorovitskiy
bioRxiv posted 23 February 2023
Cortical cell assemblies and their underlying connectivity: an in silico study
Andras Ecker, Daniela Egas Santander, Sirio Bolanos Puchet, James B. Isbister, and Michael W. Reimann
bioRxiv posted 24 February 2023
Hippocampal engrams generate flexible behavioral responses and brain-wide network states
Kaitlyn E Dorst, Ryan A Senne, Anh H Diep, Antje R de Boer, Rebecca L Suthard, Heloise Leblanch, Evan A Ruesch, Sara Skelton, Olivia P McKissick, John H Bladon, and Steve Ramirez
bioRxiv posted 24 February 2023
Replay as a basis for backpropagation through time in the brain
Huzi Cheng and Joshua Brown
bioRxiv posted 24 February 2023
Modality of odor perception is transmitted to cortical brain regions from the olfactory bulb
Michelle F Craft, Andrea K Barreiro, Shree Hari Gautam, Woodrow Shew, and Cheng Ly
bioRxiv posted 27 February 2023
Recurrent connectivity structure controls the emergence of co-tuned excitation and inhibition
Emmanouil Giannakakis, Oleg Vinogradov, Victor Buendia, and Anna Levina
bioRxiv posted 28 February 2023
Causal inference during closed-loop navigation: parsing of self- and object-motion
Jean-Paul Noel, Johannes Bill, Haoran Ding, John Vastola, Gregory C DeAngelis, Dora E Angelaki, Jan Drugowitsch
bioRxiv posted 30 January 2023
