From the bioRxiv: A Selection of Recently Posted Papers from SCGB Investigators and Others
A recurrent neural network model of prefrontal brain activity during a working memory task
Emilia P Piwek, Mark G Stokes, and Christopher P Summerfield
bioRxiv posted 2 September 2022
Cortical Circuit Mechanisms of Multimodal Temporal Pattern Discrimination
Sam Post, William Mol, Omar Abu-Wishah, Shazia Ali, Noorhan Rahmatullah, and Anubhuti Goel
bioRxiv posted 8 September 2022
Imaging through Windansee electrode arrays reveals a small fraction of local neurons following surface MUA
Martin Thunemann, Lorraine Hossain, Torbjørn V Ness, Nicholas Rogers, Keundong Lee, Sang-Heong Lee, Kıvılcım Kılıc, Hongseok Oh, Michael Nicholas Economo, Vikash Gilja, Gaute Einevoll, Shadi Dayeh, and Anna Devor
bioRxiv posted 3 September 2022
Excitation creates a distributed pattern of cortical suppression due to varied recurrent input
Jonathan F. O’Rawe, Zhishang Zhou, Anna J. Li, Paul K. LaFosse, Hannah C. Goldbach, and Mark H. Histed
bioRxiv posted 3 September 2022
Cell type-specific basal forebrain GABAergic neuronal activity with olfactory task performance, learning, and decision-making
Elizabeth L Hanson Moss, Evelyne K Tantry, Elaine Le, Katie Brandel-Ankrapp, and Benjamin R Arenkiel
bioRxiv posted 4 September 2022
The locus coeruleus mediates behavioral flexibility
Jim McBurney-Lin and Hongdian Yang
bioRxiv posted 4 September 2022
Disentangled multi-subject and social behavioral representations through a constrained subspace variational autoencoder (CS-VAE)
Daiyao Yi, Simon Musall, Anne Churchland, Nancy Padilla-Coreano, and Shreya Saxena
bioRxiv posted 5 September 2022
Neural cognitive signals during spontaneous movements in the macaque
Sebastien Tremblay, Camille Testard, Ron W DiTullio, Jeanne Inchauspe, and Michael Petrides
bioRxiv posted 6 September 2022
Self-generated brain-wide spiking cascades govern replay dynamics in the hippocampus
Yifan Yang, David Leopold, Jeff Duyn, and Xiao Liu
bioRxiv posted 6 September 2022
Graded optogenetic activation of the auditory pathway for neural network analysis and hearing restoration
Artur Mittring, Tobias Moser, and Antoine Tarquin Huet
bioRxiv posted 6 September 2022
Cognition through internal models: Mirror neurons as one manifestation of a broader mechanism
Tyson Aflalo, Srinivas Chivukula, Carey Zhang, Emily R Rosario, Nader Pouratian, and Richard A Andersen
bioRxiv posted 8 September 2022
Visual object topographic motifs emerge from self-organization of a unified representational space
Fenil R. Doshi and Talia Konkle
bioRxiv posted 8 September 2022
Evolution of predictive memory in the hippocampus
Adam M P Miller, Alex D Jacob, Adam I Ramsaran, Mitchell L De Snoo, Sheena A Josselyn, and Paul W Frankland
bioRxiv posted 9 September 2022
Unsupervised Restoration of a Complex Learned Behavior After Large-Scale Neuronal Perturbation
Bo Wang, Zsofia Torok, Alison Duffy, David Bell, Shelyn Wongso, Tarciso Velho, Adrienne Fairhall, and Carlos Lois
bioRxiv posted 10 September 2022
Local and long-distance inputs dynamically regulate striatal acetylcholine during decision making
Lynne Chantranupong, Celia C Beron, Joshua A Zimmer, Michelle J Wen, Wengang Wang, and Bernardo Luis Sabatini
bioRxiv posted 10 September 2022
Activity in primate visual cortex is minimally driven by spontaneous movements
Bharath C Thalluri, Incheol Kang, Adam Lazere, Katrina R Quinn, Nicholas Kaliss, Jacob Yates, Daniel A Butts, and Hendrikje Nienborg
bioRxiv posted 10 September 2022
Subtype-specific roles of ellipsoid body ring neurons in sleep regulation in Drosophila
Wei Yan, Hai Lin, Junwei Yu, Timothy D Wiggin, Litao Wu, Zhiqiang Meng, Chang Liu, and Leslie Griffith
bioRxiv posted 13 September 2022
Correlated somatosensory input in parvalbumin/pyramidal cells in mouse motor cortex
Roman U Goz and Bryan M Hooks
bioRxiv posted 13 September 2022
Cross-Modal Representation of Identity in Primate Hippocampus
Timothy Tyree, Michael Metke, and Cory Miller
bioRxiv posted 13 September 2022
Non-necessary neural activity in the primate cortex
Sebastien Tremblay, Camille Testard, Jeanne Inchauspe, and Michael Petrides
bioRxiv posted 13 September 2022
Comparing the representation of a simple visual stimulus across the cerebellar network
Ot Prat, Luigi Petrucco, Vilim Stih, and Ruben Portugues
bioRxiv posted 14 September 2022
Neural Representations of Post-Decision Choice Confidence and Reward Expectation in the Caudate Nucleus and Frontal Eye Field
Yunshu Fan, Takahiro Doi, Joshua I Gold, and Long Ding
bioRxiv posted 14 September 2022
Action prediction error: a value-free dopaminergic teaching signal that drives stable learning
Francesca Greenstreet, Hernando Martinez Vergara, Sthitapranjya Pati, Laura Schwarz, Mathew Wisdom, Fred Marbach, Yvonne Johansson, Lars Rollik, Theodore Moskovitz, Claudia M Clopath, and Marcus Stephenson-Jones
bioRxiv posted 14 September 2022
Rapid fluctuations in functional connectivity of cortical networks encode spontaneous behavior
Hadas Benisty, Andrew H Moberly, Sweyta Lohani, Daniel Barson, Ronald R Coifman, Gal Mishne, Jessica A Cardin and Michael J Higley
bioRxiv. posted 15 August 2021
Fast Adaptation to Rule Switching using Neuronal Surprise
martin Louis Lucien Remy Barry and Wulfram Gerstner
bioRxiv posted 15 September 2022
Synaptic Competition Enhances the Discrimination of Interfering Memories
Chi Chung Alan Fung and Tomoki Fukai
bioRxiv posted 15 September 2022
Modeling communication and switching nonlinear dynamics in multi-region neural activity
Orren Karniol-Tambour, David M Zoltowski, E. Mika Diamanti, Lucas Pinto, David W Tank, Carlos W Brody, and Jonathan W Pillow
bioRxiv posted 15 September 2022
BRAin-wide Neuron quantification Tool reveals strong sexual dimorphism in the evolution of fear memory
Alessandra Franceschini, Giacomo Mazzamuto, Curzio Checcucci, Lorenzo Chicci, Duccio Fanelli, Francesco Saverio Pavone, and Ludovico Silvestri
bioRxiv posted 16 September 2022
The mushroom body output encodes behavioral decision during sensory-motor transformation
Cansu Arican, Felix Johannes Schmitt, Wolgang Roessler, Martin Fritz Strube-Bloss, and Martin Paul Nawrot
bioRxiv posted 16 September 2022
Rapid learning of neural circuitry from holographic ensemble stimulation enabled by model-based compressed sensing
Marcus A Triplett, Marta Gajowa, Benjamin Antin, Masato Sadahiro, Hillel Adesnik, and Liam Paninski
bioRxiv posted 17 September 2022
Cell-type-specific roles of inhibitory interneurons in the rehabilitation of auditory cortex after peripheral damage
Manoj Kumar, Gregory Handy, Stylianos Kouvaros, Lovisa Ljungqvist Brinson, Brandon Bizup, Brent Doiron, and Thanos Tzounopoulos
bioRxiv posted 17 September 2022
Efficient coding of natural images in the mouse visual cortex
Federico Bolanos, Javier G. Orlandi, Ryo Aoki, Akshay Jagadeesh, Justin Gardner, and Andrea Benucci
bioRxiv posted 17 September 2022
Medial accumbens shell spiny projection neurons encode relative reward preference
Christian E Pedersen, Daniel C Castro, Madelyn M Hjort, Zhe C Zhou, Sean C Piantadosi, Raajaram Gowrishankar, Shane A Kan, Patick J Murphy, Patrick R O’Neill, and Michael Bruchas
bioRxiv posted 18 September 2022
Integrating artificial and biological neural networks to improve animal task performance using deep reinforcement learning
Chenguang Li, Gabriel Kreiman, and Sharad Ramanathan
bioRxiv posted 19 September 2022
Disentangling temporal and rate codes in primate somatosensory cortex
Thierri Callier, Thomas Gitchell, Michael A Harvey, and Sliman J Bensmaia
bioRxiv posted 19 September 2022
A Computational Model of Learning Flexible Navigation in a Maze by Layout-Conforming Replay of Place Cells
Yuanxiang Gao
bioRxiv posted 19 September 2022
Prefrontal neuronal dynamics in the absence of task execution
Shusen Pu, Wenhao Dang, Xuelian Qi, and Christos Constantinidis
bioRxiv posted 19 September 2022
Distributed coding of evidence accumulation across the mouse brain using microcircuits with a diversity of timescales
Elaheh Imani, Setayesh Radkani, Alireza Hashemi, Ahad Harati, Hamidreza Pourreza, and Morteza Moazami Goudarzi
bioRxiv posted 19 September 2022
The logic of recurrent circuits in the primary visual cortex
Ian Antón Oldenburg, William D. Hendricks, Gregory Handy, Kiarash Shamardani, Hayley A. Bounds, Brent Doiron, and Hillel Adesnik
bioRxiv posted 22 September 2022
Corticothalamic Neurons in Motor Cortex Have a Permissive Role in Motor Execution
Lina Marcela Carmona, Lin T Tun, An Kim, Rani Shiao, Michael D Kissner, Vilas Menon, and Rui M Costa
bioRxiv posted 22 September 2022
Odorant Mixture Separation in Drosophila Early Olfactory System
Aurel A Lazar, Tingkai Liu, Chung-Heng Yeh, and Yiyin Zhou
bioRxiv posted 22 September 2022
Cell-type specific deletions of Neuroligin 2 reveal a vital role of synaptic excitation-inhibition balance
Colleen M. Longley, Xize Xu, Jessica E. Messier, Zhao-Lin Cai, Jung Woo Park, Hongmei Chen, Derek L. Reznik, Monika P. Jadi, and Mingshan Xue
bioRxiv posted 24 September 2022
Preserved neural population dynamics across animals performing similar behaviour
Mostafa Safaie, Joanna C Chang, Junchol Park, Lee E Miller, Joshua T Dudman, Matthew G Perich, and Juan Alvaro Gallego
bioRxiv posted 27 September 2022
Primate pre-arcuate cortex actively maintains persistent representations of saccades from plans to outcomes
Ioana Calangiu, Sepp Kollmorgen, John Reppas, and Valerio Mante
bioRxiv posted 27 September 2022
3D Printed Skull Cap and Benchtop Fabricated Microwire-based Microelectrode Array for Custom Rat Brain Recordings
Dongyang Yi, Jeremiah P Hartner, Brian S Ung, Harrison L Zhu, Brendon O Watson, and Lei Chen
bioRxiv posted 27 September 2022
Hippocampo-cortical circuits for selective memory encoding, routing, and replay
Ryan E Harvey, Heath L Robinson, Can Liu, Azahara Oliva, and Antonio Fernandez-Ruiz
bioRxiv posted 27 September 2022
Brain mechanism of foraging: reward-dependent synaptic plasticity or neural integration of values?
Ulises Pereira-Obilinovic, Han Hou, Karel Svoboda, and Xiao-Jing Wang
bioRxiv posted 27 September 2022
Phase of firing does not reflect temporal order in sequence memory of humans and recurrent neural networks
Stefanie Liebe, Johannes Niediek, Matthijs Pals, Thomas P. Reber, Jennifer Faber, Jan Bostroem, Christian E. Elger, Jakob H Macke, and Florian Mormann
bioRxiv posted 27 September 2022
Common population codes produce extremely nonlinear neural manifolds
Anandita De and Rishidev Chaudhuri
bioRxiv posted 28 September 2022
Specific connectivity optimizes learning in thalamocortical loops
Kaushik Lakshminarasimhan, Marjorie Xie, Jeremy D Cohen, Britton Sauerbrei, Adam W Hantman, Ashok Litwin-Kumar, and Sean Escola
bioRxiv posted 28 September 2022
Subpopulation Codes Permit Information Modulation Across Cortical States
Matthew P Getz, Chengcheng Huang, and Brent Doiron
bioRxiv posted 30 September 2022
Disentangling with Biological Constraints: A Theory of Functional Cell Types
James C.R. Whittington, Will Dorrell, Surya Ganguli, Timothy E.J. Behrens
arXiv posted 30 September 2022
