From the bioRxiv: A Selection of Recently Posted Papers from SCGB Investigators and Others
Distractibility and impulsivity neural states are distinct from attention states and modulate the implementation of attention
Julian Amengual, Fabio Di Bello, Sameh Ben Hadj Hassen, and Suliann Ben Hamed
bioRxiv posted 30 November 2021
Quasi-universal scaling in mouse-brain neuronal activity stems from edge-of-instability critical dynamics
Guillermo B. Morales, Serena Di Santo, and Miguel A Muñoz
bioRxiv posted 23 November 2021
A structured scaffold underlies activity in the hippocampus
Dounia Mulders, Man Yi Yim, Jae Sung Lee, Albert K. Lee, Thibaud Taillefumier, and Ila Fiete
bioRxiv posted 22 November 2021
A deep learning framework for inference of single-trial neural population activity from calcium imaging with sub-frame temporal resolution
Feng Zhu, Harrison A Grier, Raghav Tandon, Changjia Cai, Andrea Giovannucci, Matthew T Kaufman, and Chethan Pandarinath
bioRxiv posted 21 November 2021
Multi-timescale biological learning algorithms train spiking neuronal network motor control
Daniel Hasegan, Matt Deible, Christopher Earl, David D’Onofrio, Hananel Hazan, Haroon Anwar, and Samuel A Neymotin
bioRxiv posted 20 November 2021
Passive Exposure Sparsifies Neural Activity in the Primary Visual Cortex
Jan Homann, Hyewon Kim, David W Tank, and Michael J Berry, II
bioRxiv posted 20 November 2021
A neural mechanism for detecting object motion during self-motion
HyungGoo Kim, Dora Angelaki, and Gregory DeAngelis
bioRxiv posted 19 November 2021
Complementary population codes in the dorsal and ventral hippocampus during associative learning
Jeremy S Biane, Max A Ladow, Fabio Stefanini, Sayi P Boddu, Austin Fan, Shazreh Hassan, Naz Dundar, Daniel L Apodaca-Montano, Nicholas I Woods, and Mazen A Khierbek
bioRxiv posted 18 November 2021
Optimal information loading into working memory in prefrontal cortex
Jake P Stroud, Kei Watanabe, Takafumi Suzuki, Mark G Stokes, and Máté Lengyel
bioRxiv posted 17 November 2021
Reliable population utility signal from diverse economic value coding in orbitofrontal neurons
Simone Ferrari-Toniolo and Wolfram Schultz
bioRxiv posted 13 November 2021
PatchWarp: Corrections of non-uniform image distortions in two-photon calcium imaging data by patchwork affine transformations
Ryoma Hattori and Takaki Komiyama
bioRxiv posted 13 November 2021
Recurrent neural circuits overcome partial inactivation by compensation and re-learning
Colin J Bredenberg, Cristina Savin, and Roozbeh Kiani
bioRxiv posted 13 November 2021
Neural Population Geometry Reveals the Role of Stochasticity in Robust Perception
Joel Dapello, Jenelle Feather, Hang Le, Tiago Marques, David D. Cox, Josh H. McDermott, James J. DiCarlo, SueYeon Chung
arXiv posted 12 November 2021
Contribution of linear and nonlinear mechanisms to predictive motion estimation
Belle Liu, Arthur Hong, Fred Rieke, and Michael B. Manookin
bioRxiv posted 11 November 2021
Compositional Restricted Boltzmann Machines Unveil the Brain-Wide Organization of Neural Assemblies
Thijs L van der Plas, Jérôme Tubiana, Guillaume Le Goc, Geoffrey Migault, Michael Kunst, Herwig Baier, Volker Bormuth, Bernhard Englitz, and Georges Debrégeas
bioRxiv posted 11 November 2021
Parametric control of flexible timing through low-dimensional neural manifolds
Manuel Beiran, Nicolas Meirhaeghe, Hansem Sohn, Mehrdad Jazayeri, and Srdjan Ostojic
bioRxiv posted 10 November 2021
Fast and sensitive GCaMP calcium indicators for imaging neural populations
Loren Looger, Yan Zhang, Martón Rózsa, Yajie Liang, Daniel Bushey, Ziqiang Wei, Jihong Zheng, Daniel Reep, Gerald Joey Broussard, Arthur Tsang, Getahun Tsegaye, Sujatha Narayan, Christopher J Obara, Jing-Xuan Lim, Ronak Patel, Rongwei Zhang, Misha B Ahrens, Glenn C Turner, Samuel S Wang, Wyatt Korff, Eric R Schreiter, Karel Svoboda, Jeremy P Hasseman, and Ilya Kolb
bioRxiv posted 8 November 2021
Three-dimensional spike localization and improved motion correction for Neuropixels recordings
Julien Boussard, Erdem Varol, Hyun Dong Lee, Nishchal Dethe, and Liam Paninski
bioRxiv posted 8 November 2021
3D reconstruction of cell nuclei in a full Drosophila brain
Shang Mu, Szi-chieh Yu, Nicholas L. Turner, Claire E. McKellar, Sven Dorkenwald, Forrest Collman, Selden Koolman, Merlin Moore, Sarah Morejohn, Ben Silverman, Kyle Willie, Ryan Willie, Doug Bland, Austin Burke, Zoe Ashwood, Kyle Luther, Manuel Castro, Oluwaseun Ogedengbe, William Silversmith, Jingpeng Wu, Akhilesh Halageri, Thomas Macrina, Nico Kemnitz, Mala Murthy, and H. Sebastian Seung
bioRxiv posted 4 November 2021
Explaining heterogeneity in medial entorhinal cortex with task-driven neural networks
Aran Nayebi, Alexander Attinger, Malcolm G. Campbell, Kiah Hardcastle, Isabel I.C. Low, Caitlin S. Mallory, Gabriel C. Mel, Ben Sorscher, Alex H. Williams, Surya Ganguli, Lisa M. Giocomo, and Daniel L.K. Yamins
bioRxiv posted 2 November 2021
Multi-area recordings and optogenetics in the awake, behaving marmoset
Patrick Jendritza, Frederike J Klein, and Pascal Fries
bioRxiv posted 2 November 2021
Diverse operant control of different motor cortex populations during learning
Nuria Vendrell-Llopis, Ching Fang, Albert J Qu, Rui M Costa, and Jose M Carmena
bioRxiv posted 2 November 2021
Flexible circuit mechanisms for context-dependent song sequencing
Frederic A Roemschied, Diego Armando Pacheco Pinedo, Elise C Ireland, Xinping Li, Max J Aragon, Rich K Pang, and Mala Murthy
bioRxiv posted 2 November 2021
Invariant neural subspaces maintained by feedback modulation
Laura Bella Naumann, Joram Keijser, and Henning Sprekeler
bioRxiv posted 1 November 2021
Tracking neural activity from the same cells during the entire adult life of mice
Siyuan Zhao, Xin Tang, Sebastian Partarrieu, Shiqi Guo, Ren Liu, Jaeyong Lee, Zuwan Lin, and Jia Liu
bioRxiv posted 1 November 2021
Fragmented Spatial Maps: State Abstraction and Efficient Planning from Surprisal
Mirko Klukas, Sugandha Sharma, Yilun Du, Tomas Lozano-Perez, Leslie Pack Kaelbling, and Ila Fiete
bioRxiv posted 1 November 2021
Decoding grasp and speech signals from the cortical grasp circuit in a tetraplegic human
Sarah Kim Wandelt, Spencer Kellis, David Bjanes, Kelsie Pejsa, Brian Lee, Charles Liu, and Richard A. Andersen
bioRxiv posted 1 November 2021
Generalized Shape Metrics on Neural Representations
Alex H. Williams, Erin Kunz, Simon Kornblith, Scott W. Linderman
arXiv posted 27 October 2021
