From the bioRxiv: A Selection of Recently Posted Papers from SCGB Investigators and Others
Modularity and neural coding from a brainstem synaptic wiring diagram
Ashwin Vishwanathan, Alexandro Ramirez, Jingpeng Wu, Alex Sood, Runzhe Yang, Nico Kemnitz, Dodam Ih, Nicholas Turner, Kisuk Lee, Ignacio Tartavull, William M Silversmith, Chris S Jordan, Celia David, Doug Bland, Mark S Goldman, Emre Aksay, and Hyunjune Sebastian Seung
bioRxiv posted 28 October 2020
Robust Encoding of Abstract Rules by Distinct Neuronal Populations in Primate Visual Cortex
Donatas Jonikaitis, Nir Nissim, Ruobing Xia, and Tirin Moore
bioRxiv posted 28 October 2020
Neuropixels 2.0: A miniaturized high-density probe for stable, long-term brain recordings
Nicholas A. Steinmetz, Cagatay Aydin, Anna Lebedeva, Michael Okun, Marius Pachitariu, Marius Bauza, Maxime Beau, Jai Bhagat, Claudia Böhm, Martijn Broux, Susu Chen, Jennifer Colonell, Richard J. Gardner, Bill Karsh, Dimitar Kostadinov, Carolina Mora-Lopez, Junchol Park, Jan Putzeys, Britton A. Sauerbrei, Rik J. J. van Daal, Abraham Z. Vollan, Marleen Welkenhuysen, Zhiwen Ye, Joshua T. Dudman, Barundeb Dutta, Adam W. Hantman, Kenneth D. Harris, Albert K. Lee, Edvard I. Moser, John O’Keefe, Alfonso Renart, Karel Svoboda, Michael Häusser, Sebastian Haesler, Matteo Carandini, and Timothy D. Harris
bioRxiv posted 28 October 2020
Dense movement with embedded sparse action-type representations in the output layer of motor cortex
Stephen P Currie, Julian Ammer, Brian Premchand, Yufei Wu, Constantinos Eleftheriou, Aldo A Faisal, Matthias H Hennig, and Ian Duguid
bioRxiv posted 27 October 2020
A Convolutional Network Architecture Driven by Mouse Neuroanatomical Data
Jianghong Shi, Michael A Buice, Eric Shea-Brown, Stefan Mihalas, and Bryan P Tripp
bioRxiv posted 25 October 2020
Learning sparse codes from compressed representations with biologically plausible local wiring constraints
Kion Fallah, Adam A. Willats, Ninghao Liu, and Christopher J. Rozell
bioRxiv posted 23 October 2020
Training-induced prefrontal neuronal changes transfer between tasks
Hua Tang, Mitchell R. Riley, Balbir Singh, Xuelian Qi, David T. Blake, and Christos Constantinidis
bioRxiv posted 23 October 2020
Recurrent Switching Dynamical Systems Models for Multiple Interacting Neural Populations
Joshua I Glaser, Matthew R Whiteway, John P Cunningham, Liam Paninski, and Scott W Linderman
bioRxiv posted 22 October 2020
Mice alternate between discrete strategies during perceptual decision-making
Zoe C. Ashwood, Nicholas A. Roy, Iris R. Stone, The International Brain Laboratory, Anne K. Churchland, Alexandre Pouget, and Jonathan W Pillow
bioRxiv posted 21 October 2020
Hippocampal replay of experience at real-world speeds
Eric L. Denovellis, Anna K. Gillespie, Michael E. Coulter, Kenneth Kay, Marielena Sosa, Jason E. Chung, Uri T. Eden, and Loren M. Frank
bioRxiv posted 21 October 2020
Multiple time-scales of decision making in the hippocampus and prefrontal cortex
Wenbo Tang, Justin D. Shin, and Shantanu P. Jadhav
bioRxiv posted 17 October 2020
Multiple decisions about one object involve parallel sensory acquisition but time-multiplexed evidence incorporation
Yul HR Kang, Anne Löffler, Danique Jeurissen, Ariel Zylberberg, Daniel Wolpert, and Michael N Shadlen
bioRxiv posted 16 October 2020
Multiscale and multimodal reconstruction of cortical structure and function
Nicholas L. Turner, Thomas Macrina, J. Alexander Bae, Runzhe Yang, Alyssa M. Wilson, Casey Schneider-Mizell, Kisuk Lee, Ran Lu, Jingpeng Wu, Agnes L. Bodor, Adam A. Bleckert, Derrick Brittain, Emmanouil Froudarakis, Sven Dorkenwald, Forrest Collman, Nico Kemnitz, Dodam Ih, William M. Silversmith, Jonathan Zung, Aleksandar Zlateski, Ignacio Tartavull, Szi-chieh Yu, Sergiy Popovych, Shang Mu, William Wong, Chris S. Jordan, Manuel Castro, JoAnn Buchanan, Daniel J. Bumbarger, Marc Takeno, Russel Torres, Gayathri Mahalingam, Leila Elabbady, Yang Li, Erick Cobos, Pengcheng Zhou, Shelby Suckow, Lynne Becker, Liam Paninski, Franck Polleux, Jacob Reimer, Andreas S. Tolias, R. Clay Reid, Nuno Macarico da Costa, and H. Sebastian Seung
bioRxiv posted 14 October 2020
Generalized paradoxical effects in excitatory/inhibitory networks
Kenneth D Miller and Agostina Palmigiano
bioRxiv posted 13 October 2020
Point process models for sequence detection in high-dimensional neural spike trains
Alex H. Williams, Anthony Degleris, Yixin Wang, Scott W. Linderman
arXiv, 10 October 2020
Neural Network Organization for Courtship Song Feature Detection in Drosophila
Christa A Baker, Claire McKellar, Aljoscha Nern, Sven Dorkenwald, Barry J Dickson, and Mala Murthy
bioRxiv posted 9 October 2020
A general decoding strategy explains the relationship between behavior and correlated variability
Amy M Ni, Chengcheng Huang, Brent Doiron, and Marlene R Cohen
bioRxiv posted 8 October 2020
When the ventral visual stream is not enough: A deep learning account of medial temporal lobe involvement in perception
Tyler Bonnen, Daniel L.K. Yamins, and Anthony D. Wagner
bioRxiv posted 8 October 2020
State space discovery in spatial representation circuits with persistent cohomology
Louis Kang, Boyan Xu, and Dmitriy Morozov
bioRxiv posted 8 October 2020
Optimal Adaptive Electrode Selection to Maximize Simultaneously Recorded Neuron Yield
John Choi, Krishan Kumar, Mohammad Khazali, Katie Wingel, Mahdi Choudhury, Adam Charles, and Bijan Pesaran
bioRxiv posted 8 October 2020
Distinct algorithms for combining landmarks and path integration in medial entorhinal, visual and retrosplenial cortex
Malcolm G Campbell, Alexander Attinger, Samuel A Ocko, Surya Ganguli, and Lisa M Giocomo
bioRxiv posted 7 October 2020
Dynamic and reversible remapping of network representations in an unchanging environment
Isabel I.C. Low, Alex H Williams, Malcolm G Campbell, Scott W Linderman, and Lisa M Giocomo
bioRxiv posted 7 October 2020
Representational drift in the mouse visual cortex
Daniel Deitch, Alon Rubin, and Yaniv Ziv
bioRxiv posted 5 October 2020
A gradual backward shift of dopamine responses during associative learning
Ryunosuke Amo, Akihiro Yamanaka, Kenji F Tanaka, Naoshige Uchida, and Mitsuko Watabe-Uchida
bioRxiv posted 5 October 2020
Spatial representations in macaque hippocampal formation
Dun Mao, Eric Avila, Baptiste Caziot, Jean Laurens, David Dickman, and Dora Angelaki
bioRxiv posted 4 October 2020
TREBLE: a generalizable framework for high-throughput behavioral analysis
Ryan A York, Lisa M. Giocomo and Thomas R. Clandinin
bioRxiv posted 2 October 2020
Cellular Anatomy of the Mouse Primary Motor Cortex
Rodrigo Muñoz-Castaneda, Brian Zingg, Katherine S Matho, Quanxin Wang, Xiaoyin Chen, Nicholas N Foster, Arun Narasimhan, Anan Li, Karla E Hirokawa, Bingxing Huo, Samik Banerjee, Laura Korobkova, Chris Sin Park, Young-Gyun Park, Michael S Bienkowski, Uree Chon, Diek W Wheeler, Xiangning Li, Yun Wang, Kathleen Kelly, Xu An, Sarojini M Attili, Ian Bowman, Anastasiia Bludova, Ali Cetin, Liya Ding, Rhonda Drewes, Florence D’Orazi, Corey Elowsky, Stephan Fischer, William Galbavy, Lei Gao, Jesse Gillis, Peter A Groblewski, Lin Gou, Joel D Hahn, Joshua T Hatfield, Houri Hintiryan, Jason Huang, Hideki Kondo, Xuili Kuang, Philip Lesnar, Xu Li, Yaoyao Li, Mengkuan Lin, Lijuan Liu, Darrick Lo, Judith Mizrachi, Stephanie Mok, Maitham Naeemi, Philip R Nicovich, Ramesh Palaniswamy, Jason Palmer, Xiaoli Qi, Elise Shen, Yu-Chi Sun, Huizhong Tao, Wayne Wakeman, Yimin Wang, Peng Xie, Shenqin Yao, Jin Yuan, Muye Zhu, Lydi a Ng, Li I Zhang, Byung Kook Lim, Michael Hawrylycz, Hui Gong, James C Gee, Yongsoo Kim, Hanchuan Peng, Kwanghun Chung, X William Yang, Qingming Luo, Partha P Mitra, Anthony M Zador, Hongkui Zeng, Giorgio A Ascoli, Z Josh Huang, Pavel Osten, Julie A Harris, and Hong-Wei Dong
bioRxiv posted 2 October 2020
Striatal indirect pathway mediates action switching via modulation of collicular dynamics
Jaeeon Lee and Bernardo Luis Sabatini
bioRxiv posted 1 October 2020
